Not a Helix user yet but what I had to learn on my first SI unit was to turn the sensitivity down, like to 4-6. I mostly fish clear water, soft bottom lakes with little to no features along the bottom, all less then 40' deep in the deepest parts. To my eyes, it became easier to find both fish and what little structure there was when I went below the middle setting on both contrast and sensitivity. It will depend on the color pallet you choose where you end up.
On the small screen of my 598, 60' is about the max when looking for structure and when looking for fish I'm usually below 50 because the fish dots are so small. That new Helix 9 should be awesome when you get it figured out.
Don't give up, play back your recordings time after time with different settings. You'll get it and then you'll say "Wow".
Yes, I was talking to myself; sometimes even I have to ask for expert advice.